Calmodulin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calmodulin
  Conformer 1
(PDB)
6y4o (A)
  Conformer 2
(PDB)
5k8q (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 69 0.98   6 - 74
2 65 4.28   75 - 143

Sequence


           ________________________________________________________________67______________________________________________________ 
 6y4o(A) : **LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKM-sEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEM 
         :                                                                                                                          
 5k8q(A) : DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKsEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEM 
           ________________________________________________________________67______________________________________________________ 

           _______________________                                                                                                  
 6y4o(A) : IREADIDGDGQVNYEEFVQMM**                                                                                                  
         :                                                                                                                          
 5k8q(A) : IREADIDGDGQVNYEEFVQMMTA                                                                                                  
           _______________________                                                                                                  

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
155.9
Translation
(A)
-10.3
Closure
(%)
90.5
Bending Residues
( green )
  67 - 84
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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