Calmodulin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calmodulin
  Conformer 1
(PDB)
3cln (A)
  Conformer 2
(PDB)
1qs7 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 70 1.24   76 - 145
2 69 0.88   7 - 75

Sequence


           ____________________________________________________________________73__________________________________________________ 
 3cln(A) : *TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDE 
         :                                                                                                                          
 1qs7(A) : LTDEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDE 
           ____________________________________________________________________73__________________________________________________ 

           _________________________                                                                                                
 3cln(A) : MIREANIDGDGQVNYEEFVQMMTA*                                                                                                
         :                                                                                                                          
 1qs7(A) : MIREADVDGDGQVNYEEFVQVMMAK                                                                                                
           _________________________                                                                                                

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
148.2
Translation
(A)
-1.9
Closure
(%)
89.6
Bending Residues
( green )
  73 - 78
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download