Calmodulin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calmodulin
  Conformer 1
(PDB)
5k8q (A)
  Conformer 2
(PDB)
4djc (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 73 1.19   4 - 76
2 66 1.31   77 - 145

Sequence


           _____________________________________________________________________________76_________________________________________ 
 5k8q(A) : ****DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMK---sEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLT 
         :                                                                                                                          
 4djc(A) : NAMADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLT 
           _____________________________________________________________________________77_________________________________________ 

           _______________________________                                                                                          
 5k8q(A) : DEEVDEMIREADIDGDGQVNYEEFVQMMTA*                                                                                          
         :                                                                                                                          
 4djc(A) : DEEVDEMIREADIDGDGQVNYEEFVQMMTAK                                                                                          
           _______________________________                                                                                          

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
127.0
Translation
(A)
-4.0
Closure
(%)
99.8
Bending Residues
( green )
  76 - 82
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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