Calmodulin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calmodulin
  Conformer 1
(PDB)
5k8q (A)
  Conformer 2
(PDB)
3evr (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 74 2.91   69 - 145
2 65 0.54   4 - 68

Sequence


           ________________________________________________________________________________________________________________________ 
 5k8q(A) : ************************************************************************************************************************ 
         :                                                                                                                          
 3evr(A) : DSSRRKWNKTGHAVRAIGRLSSLENVYIMADKQKNGIKANFKIRHNIEDGGVQLAYHYQQNTPIGDGPVLLPDNHYLSTQSKLSKDPNEKRDHMVLLEFVTAAGITLGvSKGEELFTGVV 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 5k8q(A) : ************************************************************************************************************************ 
         :                                                                                                                          
 3evr(A) : PILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLvQCFSRYPDHMKQHDFFKSAMPEGYIQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGN 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________________________65_____________________________________________ 
 5k8q(A) : ***********DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMK---sEEEIREAFRVFDKDGNGYISAAELRHVMT 
         :                                                                                                                          
 3evr(A) : ILGHKLEYNTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMT 
           ________________________________________________________________________368_____________________________________________ 

           _____________________________________                                                                                    
 5k8q(A) : NLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA                                                                                    
         :                                                                                                                          
 3evr(A) : NLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA                                                                                    
           _____________________________________                                                                                    

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
166.7
Translation
(A)
-1.3
Closure
(%)
73.1
Bending Residues
( green )
  65 - 77
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download