Cd2 (Human)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Cd2 (Human)
  Conformer 1
(PDB)
1hng (A)
  Conformer 2
(PDB)
1cdc (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 52 1.15   46 - 97
2 40 0.74   6 - 45

Sequence


           ________________________________________43______________________________________________________________________________ 
 1hng(A) : DSGTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPMIYWECSNATLTCEVLE 
         :                                                                                                                          
 1cdc(A) : **GTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRILDKALDLRILE********************** 
           ________________________________________43______________________________________________________________________________ 

           _______________________________________________________                                                                  
 1hng(A) : GTDVELKLYQGKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNCPE                                                                  
         :                                                                                                                          
 1cdc(A) : *******************************************************                                                                  
           _______________________________________________________                                                                  

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
179.9
Translation
(A)
0.6
Closure
(%)
90.3
Bending Residues
( green )
  43 - 50
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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