Chaperone Protein Htpg

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Chaperone Protein Htpg
  Conformer 1
(PDB)
2ioq (B)
  Conformer 2
(PDB)
2cg9 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 359 4.69   122 - 123   228 - 622
2 197 6.92   19 - 121   124 - 227

Sequence


           __________________________________________________________________________________________________________________119___ 
 2ioq(B) : *****GFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQ 
         :                                                                                                                          
 2cg9(B) : ASETFEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSA--GADVSMIGQ 
           __________________________________________________________________________________________________________________116___ 

           __________________________________________________________________________________________________________227___________ 
 2ioq(B) : FGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYTVA-DITKE--DRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPV------EIEKReTVISWEKINKAQALWTRNK 
         :                                                                                                                          
 2cg9(B) : FGVGFYSLFLVADRVQVISKSNDDEQ---YIWESNAGGSFTVTLDEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQLVVTKEVEKEeEVQEIEELNKTKPLWTRNP 
           __________________________________________________________________________________________________________270___________ 

           ________________________________________________________________________________________________________________________ 
 2ioq(B) : SEITDEEYKEFYKHIAHDFNDPLTWSHNRVEGKQEYTSLLYIPSQAPWDMW-NRDHKHGLKLYVQRVFIMDDAEQFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRNLRNALTKRVL 
         :                                                                                                                          
 2cg9(B) : SDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFESKKKKNNIKLYVRRVFITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLI 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2ioq(B) : QMLEKLAKDDAEKYQTFWQQFGLVLKEGPAEDFANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDG 
         :                                                                                                                          
 2cg9(B) : EAFNEIA-EDSEQFEKFYSAFSKNIKLGVHEDTQNRAALAKLLRYNSTK--SVDELTSLTDYVTRMPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLKEFEG 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2ioq(B) : KPFQSVSK-----------VaKEAE-KALTPFIDRVKALLGERVKDVRLTHRLTDTPAIV-------STDAkYI-------FELNPDHVLVKRAADTEDEA-----KFSEWVELLLDQAL 
         :                                                                                                                          
 2cg9(B) : KTLVDITKDFELEETDEEKAEREKEIKEYEPLTKALKEILGDQVEKVVVSYKLLDAPAAIRTGQFGWSANMERIMKAQAkTFEISPKSPIIKELKKRVDEGGAQDKTVKDLTKLLYETAL 
           ________________________________________________________________________________________________________________________ 

           __________________________                                                                                               
 2ioq(B) : LAERGTLEDPNLFIRRMNQLLVS***                                                                                               
         :                                                                                                                          
 2cg9(B) : LTSGFSLDEPTSFASRINRLISLGLN                                                                                               
           __________________________                                                                                               

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
95.7
Translation
(A)
-3.2
Closure
(%)
6.6
Bending Residues
( green )
  119 - 124
  227 - 228
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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