DynDom - Protein Domain Motions

Condensin Complex Subunit 3

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Condensin Complex Subunit 3
Conformer 1 (PDB)	5oqp (A)
Conformer 2 (PDB)	5oqq (A)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	404	1.36	10 - 349 353 - 382 387 - 399 420 - 433 441 - 444 449 - 449 451 - 451 461 - 462 468 - 475 588 - 594 600 - 602
2	377	1.85	350 - 352 383 - 386 400 - 419 434 - 440 445 - 448 450 - 450 452 - 460 463 - 467 476 - 587 595 - 599 603 - 906

Sequence

`________________________________________________________________________________________________________________________` `5oqp(A) : DINTKIFNSVAEVFQKAQGSYAGHRKHIAVLKKIQSKAVEQGYEDAFNFWFDKLVTKILPLKKNEII-DRIVKLVAAFIASLERELILAKKQNYKLTNDEEGIFSRFVDQFIRHVLRGVE` `:` `5oqq(A) : DINTKIFNSVAEVFQKAQGSYAGHRKHIAVLKKIQSKAVEQGYEDAFNFWFDKLVTKILPLKKNEIIGDRIVKLVAAFIASLERELILAKKQNYKLTNDEEGIFSRFVDQFIRHVLRGVE` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `5oqp(A) : SPDKNVRFRVLQLLAVIMDNIGEIDESLFNLLILSLNKRIYDREPTVRIQAVFCLTKFQDfEATRTLVASIQNDPSAEVRRAAMLNLINDNNTRPYILERARDVNIVNRRLVYSRILKSM` `:` `5oqq(A) : SPDKNVRFRVLQLLAVIMDNIGEIDESLFNLLILSLNKRIYDREPTVRIQAVFCLTKFQD-eATRTLVASIQNDPSAEVRRAAMLNLINDNNTRPYILERARDVNIVNRRLVYSRILKSM` `________________________________________________________________________________________________________________________` `________________________________________________________________________________346_________________________________382_` `5oqp(A) : GRKCFDDIEPHIFDQLIEWGLEDRELSVRNACKRLIAHDWLNALDGDLIELLEKLDVSRSSVCVKAIEALFQSRPDILSKIKFP-SIWKDFTVEIAFLFRAIYLYCLDNNITEMLEENFP` `:` `5oqq(A) : GRKCFDDIEPHIFDQLIEWGLEDRELSVRNACKRLIAHDWLNALDGDLIELLEKLDVSRSSVCVKAIEALFQSRPDILSKIKFPESIWKDFTVEIAFLFRAIYLYCLDNNITEMLEENFP` `________________________________________________________________________________346_________________________________382_` `386__________399__________419___________433____440_444_448_________460____467_____475___________________________________` `5oqp(A) : EASKLSEHLNHYILLRYHHNsHFDYNTLEFIIEQLSIAAERYDYSDEVGRRSMLTVVRNMLALTTLSEPLIKIGIRVMKSLSINEKDFVTMAIEIINDIRDDDIEKQ--kEASSATIVLC` `:` `5oqq(A) : EASKLSEHLNHYILLRYH-----dYNTLEFIIEQLSIAAERYDYSDEVGRRSMLTVVRNMLALTTLSEPLIKIGIRVMKSLSINEKDFVTMAIEIINDIRDDDIEKQESkEASSATIVLC` `386__________399__________419___________433____440_444_448_________460____467_____475___________________________________` `______587____594__599___________________________________________________________________________________________________` `5oqp(A) : LTRSSYMLELVNTPLTENILIASLMDTLITPAVRNTAPNIRELGVKNLGLCCLLDVKLAIDNMYILGMCVSKGNASLKYIALQVIVDIFSVHGNTVVDGEGKVDSISLHKIFYKVLKNNG` `:` `5oqq(A) : LTRSSYMLELVNTPLTENILIASLMDTLITPAVRNTAPNIRELGVKNLGLCCLLDVKLAIDNMYILGMCVSKGNASLKYIALQVIVDIFSVHGNTVVDGEGKVDSISLHKIFYKVLKNNG` `______587____594__599___________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `5oqp(A) : LPECQVIAAEGLCKLFLADVFTDDDLFETLVLSYFSPINSSNEALVQAFAFCIPVYCFSHPAHQQRMSRTAADILLRLCVLWDDLQSSVIPEVDREAMLKPNIIFQQLLFWTDPRNLVNQ` `:` `5oqq(A) : LPECQVIAAEGLCKLFLADVFTDDDLFETLVLSYFSPINSSNEALVQAFAFCIPVYCFSHPAHQQRMSRTAADILLRLCVLWDDLQSSVIP---rEAMLKPNIIFQQLLFWTDPRNLV--` `________________________________________________________________________________________________________________________` `_____________________________________________________________________________________________` `5oqp(A) :` `TGSTKKDTVQLTFLIDVLKIYAQIEKKEIKKMIITNINAIFLSSEQDYSTLKELLEYSDDIAENDNLDNVSKNALDKLRNNLNSLIEEIN***` `:` `5oqq(A) :` `---tKKDTVQLTFLIDVLKIYAQIEKKEIKKMIITNINAIFLS--qDYSTLKELLEYSDDIAEn-----VSKNALDKLRNNLNSLIEEINERS` `_____________________________________________________________________________________________`

Morph

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Status: Initialising

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	12.2
Translation (A)	-0.4
Closure (%)	23.9
Bending Residues ( green )	346 - 353 382 - 383 386 - 387 399 - 400 419 - 420 433 - 434 440 - 441 444 - 445 448 - 452 460 - 463 467 - 468 475 - 476 587 - 588 594 - 595 599 - 600 602 - 603
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

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