Dbh Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Dbh Protein
  Conformer 1
(PDB)
1k1s (A)
  Conformer 2
(PDB)
3bq0 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 186 1.08   3 - 16   77 - 79   86 - 248   278 - 281   338 - 339
2 63 1.27   17 - 76   80 - 85
3 88 0.79   249 - 277   282 - 337   340 - 342

Sequence


           ______________16_______________________________________________________76_79____85______________________________________ 
 1k1s(A) : MIVIFVDFDYFFAQVEEVLNPQYKGKPLVVSVYSGtSGAVATANYEARKLGVKAGMPIIKAMQIAPSAIYVPMRKPIYEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKVEGNFENGI 
         :                                                                                                                          
 3bq0(A) : MIVIFVDFDYFFAQVEEVLNPQYKGKPLVVCVYSGtSGAVATANYEARKLGVKAGMPIIKAMQIAPSAIYVPMRKPIYEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKVEGNFENGI 
           ______________16_______________________________________________________76_79____85______________________________________ 

           ________________________________________________________________________________________________________________________ 
 1k1s(A) : ELARKIKQEILEKEKITVTVGVAPNKILAKIIADKSKPNGLGVIRPTEVQDFLNELDIDEIPGIGSVLARRLNELGIQKLRDILSKNYNELEKITGKAKALYLLKLAQNKYSEPVENKSK 
         :                                                                                                                          
 3bq0(A) : ELARKIKQEILEKEKITVTVGVAPNKILAKIIADKSKPNGLGVIRPTEVQDFLNELDIDEIPGIGSVLARRLNELGIQKLRDILSKNYNELEKITGKAKALYLLKLAQNKYSEPVENKSK 
           ________________________________________________________________________________________________________________________ 

           246____________________________277_281_____________________________________________________337_______                    
 1k1s(A) : IPHGRYLTLPYNTRDVKVILPYLKKAINEAYNKVNGIPMRITVIAIMEDLDILSKGKKFKHGISIDNAYKVAEDLLRELLVRDKRRNVRRIGVKLDNIIIN                    
         :                                                                                                                          
 3bq0(A) : IPHGRYLTLPYNTRDVKVILPYLKKAINEAYNKVNGIPMRITVIAIMEDLDILSKGKKFKHGISIDNAYKVAEDLLRELLVRDKRRNVRRIGVKLDNIIIN                    
           246____________________________277_281_____________________________________________________337_______                    

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
14.9
Translation
(A)
-0.8
Closure
(%)
46.9
Bending Residues
( green )
  16 - 17
  76 - 77
  79 - 80
  85 - 86
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
14.3
Translation
(A)
-0.7
Closure
(%)
47.7
Bending Residues
( green )
  246 - 249
  277 - 278
  281 - 282
  337 - 341
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

Download and extract PyMOL PML script file Download