D(-)-3-Hydroxybutyrate Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name D(-)-3-Hydroxybutyrate Dehydrogenase
  Conformer 1
(PDB)
2ztv (A)
  Conformer 2
(PDB)
2ztl (B)
  Window Length 15
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 223 0.22   8 - 29   53 - 253
2 23 0.33   30 - 52

Sequence


           ___________________________29_____________________52____________________________________________________________________ 
 2ztv(A) : MLKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFH 
         :                                                                                                                          
 2ztl(B) : MLKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFH 
           ___________________________29_____________________52____________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2ztv(A) : GTAAALPHMKKQGFGRIINIASAHGLVASANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQISALAEKNGVDQETAARELLSEKQPSLQFVTPEQLGGTAVFLAS 
         :                                                                                                                          
 2ztl(B) : GTAAALPHMKKQGFGRIINIASAHGLVASANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQISALAEKNGVDQETAARELLSEKQPSLQFVTPEQLGGTAVFLAS 
           ________________________________________________________________________________________________________________________ 

           ____________________                                                                                                     
 2ztv(A) : DAAAQITGTTVSVDGGWTAR                                                                                                     
         :                                                                                                                          
 2ztl(B) : DAAAQITGTTVSVDGGWTAR                                                                                                     
           ____________________                                                                                                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
4.6
Translation
(A)
-0.1
Closure
(%)
19.0
Bending Residues
( green )
  29 - 30
  52 - 56
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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