Dihydrodipicolinate Synthase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Dihydrodipicolinate Synthase
  Conformer 1
(PDB)
3m5v (B)
  Conformer 2
(PDB)
3ler (A)
  Window Length 11
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 241 0.24   9 - 51   56 - 56   60 - 246   256 - 265   287 - 293
2 37 0.2   52 - 55   57 - 59   247 - 255   266 - 286

Sequence


           _________________________________________________51__55__59_____________________________________________________________ 
 3m5v(B) : NAdKNIIIGAtALITPFKNGKVDEQSYARLIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGADGILSVAPYYNKPTQQGLY 
         :                                                                                                                          
 3ler(A) : **DKNIIIGAtALITPFKNGKVDEQSYARLIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGADGILSVAPYYNKPTQQGLY 
           _________________________________________________51__55__59_____________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3m5v(B) : EHYKAIAQSVDIPVLLYNVPGRTGCEISTDTIIKLFRDCENIYGVKEASGNIDKCVDLLAHEPRlISGEDAINYPILSNGGKGVISVTSNLLPDiSALTHFALDENYKEAKKINDELYNI 
         :                                                                                                                          
 3ler(A) : EHYKAIAQSVDIPVLLYNVPGRTGCEISTDTIIKLFRDCENIYGV-eASGNIDKCVDLLAHEPRlISGEDAINYPILSNGGKGVISVTSNLLPDiSALTHFALDENYKEAKKINDELYNI 
           ________________________________________________________________________________________________________________________ 

           246______255______265_____________281________________                                                                    
 3m5v(B) : NKILFCESNPIPIKTAyLAGLIESLEFRLPLCSPSKENFAKIEEVkKYKIKGF                                                                    
         :                                                                                                                          
 3ler(A) : NKILFCESNPIPIKTAyLAGLIESLEFRLPLCSPSKENFAKIEEVkKYKIKGF                                                                    
           246______255______265_____________281________________                                                                    

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
2.1
Translation
(A)
0.0
Closure
(%)
85.5
Bending Residues
( green )
  51 - 52
  55 - 57
  59 - 64
  246 - 247
  255 - 256
  265 - 266
  281 - 291
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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