Dot/icm T4ss Effector

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Dot/icm T4ss Effector
  Conformer 1
(PDB) 		6vvc (A)
  Conformer 2
(PDB) 		6vve (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 161 1.33   142 - 151   164 - 227   230 - 318
2 87 1.26   25 - 141   152 - 163   228 - 229

Sequence


           __________________________________________________________________________________________________________________141___ 
 6vvc(A) : SMLKYSTNMLELAMPKINKIVNGTDLTPHYLSEPNKEFKIYRYNNEVYAVRFENDEPMDYVLMWKSH--------------------------gRHPREFYEEINLHIIEQQFFLKYHGI 
         :                                                                                                                          
 6vve(A) : **************PKINKIVNGTDLTPHYLSEPNKEFKIYRYNNEVYAVRFENDEP-dYVL-wKSHKdYKELGKGEQGTVYEKTEDKAkVSRGRHPREFYEEINLHIIEQQFFLKYHGI 
           __________________________________________________________________________________________________________________141___ 

           ____151_________163__________________________________________________________224________________________________________ 
 6vvc(A) : QEHFVLGLWNIKNEENVYFYMPKINAIPINKKIDQPKIEEFVLALKELNDAGYWHPDLANNPYHISPQNLIATEEMVKTIDLDGGFRYDKGRVDELSRKSLVYGKDQWLYVYNFIYPPTD 
         :                                                                                                                          
 6vve(A) : QEHFVLGLWNIKNEENVYFY-pKINAIPINKKIDQPKIEEFVLALKELNDAGYWHPDLANNPYHISPQNLIATEE-vKTIDLDGGFRYDKGRVDELSRKSLVYGKDQWLYVYNFIYPPTD 
           ____151_________163__________________________________________________________224________________________________________ 

           _________________________________________________________                                                                
 6vvc(A) : EEDHRIDWRVPIEKWYENNRDESLSDNPHTLLRFYHEGLISLPKKLAHDLHETILEE                                                                
         :                                                                                                                          
 6vve(A) : EEDHRIDWRVPIEKWYENNRDESLSDNPHTLLRFYHEGLISLPKKLAHDLHETILE*                                                                
           _________________________________________________________                                                                

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		21.4
Translation
(A) 		-0.4
Closure
(%) 		48.2
Bending Residues
( green ) 		  141 - 142
  151 - 152
  163 - 164
  224 - 230
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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