D-Ribose-Binding Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name D-Ribose-Binding Protein
  Conformer 1
(PDB)
2dri  
  Conformer 2
(PDB)
1ba2 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 138 0.4   102 - 234   265 - 269
2 129 0.55   3 - 101   235 - 264

Sequence


           __________________________________________________________________________________________________101___________________ 
 2dri    : KDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKA 
         :                                                                                                                          
 1ba2(B) : KDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTRSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKA 
           __________________________________________________________________________________________________101___________________ 

           _____________________________________________________________________________________________________________232________ 
 2dri    : GEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQI 
         :                                                                                                                          
 1ba2(B) : GEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQI 
           _____________________________________________________________________________________________________________232________ 

           ___________________262_________                                                                                          
 2dri    : GAKGVETADKVLKGEKVQAKYPVDLKLVVKQ                                                                                          
         :                                                                                                                          
 1ba2(B) : GAKGVETADKVLKGEKVQAKYPVDLKLVVKQ                                                                                          
           ___________________262_________                                                                                          

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
49.0
Translation
(A)
0.4
Closure
(%)
49.1
Bending Residues
( green )
  101 - 104
  232 - 236
  262 - 267
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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