70 Kda Peptidylprolyl Isomerase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 70 Kda Peptidylprolyl Isomerase
  Conformer 1
(PDB)
2vn1 (A)
  Conformer 2
(PDB)
3ihz (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 94 0.57   9 - 94   118 - 125
2 23 0.35   95 - 117

Sequence


           ________________________________________________________________________________________94____________________117_______ 
 2vn1(A) : **FEKVELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGESIPGNSVLLFEIELLS 
         :                                                                                                                          
 3ihz(A) : ETLEQVHLTEDGGVVKTILRKGEGGEENAPKKGNEVTVHYVGKLESSGKVFDSSRERNVPFKFHLGQGEVIKGWDICVASMTKNEKCSVRLDSKYGYGEEGCGESIPGNSVLIFEIELIS 
           ________________________________________________________________________________________93____________________116_______ 

           _____                                                                                                                    
 2vn1(A) : FRELE                                                                                                                    
         :                                                                                                                          
 3ihz(A) : FRE**                                                                                                                    
           _____                                                                                                                    

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
7.8
Translation
(A)
-0.2
Closure
(%)
57.1
Bending Residues
( green )
  94 - 95
  117 - 118
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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