6-Phosphogluconate Dehydrogenase, Decarboxylating

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 6-Phosphogluconate Dehydrogenase, Decarboxylating
  Conformer 1
(PDB)
3fwn (A)
  Conformer 2
(PDB)
2zyd (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 332 0.41   80 - 80   103 - 112   115 - 116   124 - 127   138 - 145   154 - 156   161 - 464
2 129 0.72   4 - 79   81 - 102   113 - 114   117 - 123   128 - 137   146 - 153   157 - 160

Sequence


           ____________________________________________________________________________79____________________102_______112_______12 
 3fwn(A) : SKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFN 
         :                                                                                                                          
 2zyd(B) : SKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFN 
           ____________________________________________________________________________79____________________102_______112_______12 

           2__127_______137_____145_____153____160_________________________________________________________________________________ 
 3fwn(A) : FIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKDIFTK 
         :                                                                                                                          
 2zyd(B) : FIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKDIFTK 
           2__127_______137_____145_____153____160_________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3fwn(A) : KDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVAASKVLSGPQAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEIAKIFR 
         :                                                                                                                          
 2zyd(B) : KDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVAASKVLSGPQAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEIAKIFR 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________________________________________________________________              
 3fwn(A) : AGCIIRAQFLQKITDAYAENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQIGIPVPTFSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEWLD              
         :                                                                                                                          
 2zyd(B) : AGCIIRAQFLQKITDACAENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQNGIPVPTFSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEWL*              
           ___________________________________________________________________________________________________________              

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
8.6
Translation
(A)
0.3
Closure
(%)
98.1
Bending Residues
( green )
  79 - 81
  102 - 103
  112 - 117
  122 - 124
  127 - 128
  137 - 138
  145 - 146
  153 - 158
  160 - 161
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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