2-Succinylbenzoate--Coa Ligase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 2-Succinylbenzoate--Coa Ligase
  Conformer 1
(PDB)
5buq (B)
  Conformer 2
(PDB)
5bur (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 378 1.17   5 - 389
2 84 1.32   390 - 477

Sequence


           ________________________________________________________________________________________________________________________ 
 5buq(B) : TEQPNWLMQRAQLTPERIALIYEDQTVTFAELFAASKRMAEQLAAHSVRKGDTAAILLQNRAEMVYAVHACFLLGVKAVLLNTKLSTHERLFQLEDSGSGFLLTDSSFEKKEYEHIVQTI 
         :                                                                                                                          
 5bur(A) : TEQPNWLMQRAQLTPERIALIYEDQTVTFAELFAASKRMAEQLAAHSVRKGDTAAILLQNRAEMVYAVHACFLLGVKAVLLNTKLSTHERLFQLEDSGSGFLLTDSSFEKKEYEHIVQTI 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 5buq(B) : DVDELMKEAAEEIEIEAYMQMDATATLMYTS----kPKGVQQTFGNHYFSAVSSALNLGITEQDRWLIALPLFHISGLSALFKSVIYGMTVVLHQRFSVSDVLHSINRHEVTMISAVQTM 
         :                                                                                                                          
 5bur(A) : DVDELMKEAAEEIEIEAYMQMDATATLMYTSGTTGKPKGVQQTFGNHYFSAVSSALNLGITEQDRWLIALPLFHISGLSALFKSVIYGMTVVLHQRFSVSDVLHSINRHEVTMISAVQTM 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 5buq(B) : LASLLEETNRCPESIRCILLGGGPAPLPLLEECREKGFPVFQSYGMTETCSQIVTLSPEFSMEKLGSAGKPLFSCEIKIERDGQVCEPYEHGEIMVKGPNVMKSYFNRESANEASFQNGW 
         :                                                                                                                          
 5bur(A) : LASLLEETNRCPESIRCILLGGGPAPLPLLEECREKGFPVFQSYGMTETCSQIVTLSPEFSMEKLGSAGKPLFSCEIKIERDGQVCEPYEHGEIMVKGPNVMKSYFNRESANEASFQNGW 
           ________________________________________________________________________________________________________________________ 

           _______________380______________________________________________________________________________________________________ 
 5buq(B) : LKTGDLGYLDNEGFLYVLD---dLIISGGENIYPAEVESVLLSHPAVAEAGVSGAEDk--VPHAYLVLHKPVSAGELTDYCKERLAKYKIPAKFFVLDRLPRNASNKLLRNQLKDARKGE 
         :                                                                                                                          
 5bur(A) : LKTGDLGYLDNEGFLYVLDRRSDLIISGGENIYPAEVESVLLSHPAVAEAGVSGAEDKgKVPHAYLVLHKPVSAGELTDYCKERLAKYKIPAKFFVLDRLPRNASNKLLRNQLKD***** 
           _______________380______________________________________________________________________________________________________ 

           __                                                                                                                       
 5buq(B) : LL                                                                                                                       
         :                                                                                                                          
 5bur(A) : **                                                                                                                       
           __                                                                                                                       

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
89.2
Translation
(A)
-2.0
Closure
(%)
92.2
Bending Residues
( green )
  380 - 392
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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