Adenylate Kinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Adenylate Kinase
  Conformer 1
(PDB) 		4ake (A)
  Conformer 2
(PDB) 		2aky  
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 109 1.73   3 - 28   82 - 116   160 - 212
2 24 1.41   29 - 31   61 - 81
3 43 0.64   117 - 159
4 29 1.07   32 - 60

Sequence


           ____________________________28_31___________________________60____________________81____________________________________ 
 4ake(A) : **MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQED-CRNGFLLDGFPRTIPQADAM----KEAGINVDYVLEFDVPD 
         :                                                                                                                          
 2aky    : ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDD 
           ____________________________32_35___________________________64____________________86____________________________________ 

           116_______________________________________158__________________________________________________________                  
 4ake(A) : ELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKILG**                  
         :                                                                                                                          
 2aky    : ELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHAQTEPIVDFYKKTG-----IWAGVDASQPPATVWADILNKLGKN                  
           125_______________________________________167__________________________________________________________                  

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		17.8
Translation
(A) 		1.0
Closure
(%) 		37.3
Bending Residues
( green ) 		  131 - 132
  266 - 267
  270 - 271
  318 - 319
  590 - 591
  598 - 599
  602 - 603
  879 - 880
  882 - 883
  891 - 892
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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