DynDom - Protein Domain Motions

Amylomaltase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Amylomaltase
Conformer 1 (PDB)	1esw (A)
Conformer 2 (PDB)	2owx (A)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	414	0.64	3 - 215 218 - 225 247 - 247 276 - 296 299 - 300 316 - 322 327 - 328 330 - 331 336 - 355 359 - 498
2	80	0.68	216 - 217 226 - 246 248 - 275 297 - 298 301 - 315 323 - 326 329 - 329 332 - 335 356 - 358

Sequence

`________________________________________________________________________________________________________________________` `1esw(A) : MELPRAFGLLLHPTSLPGPYGVGVLGREARDFLRFLKEAGGRYWQVLPLGPTGYGDSPYQSFSAFAGNPYLIDLRPLAERGYVRLEDPGFPQGRVDYGLLYAWKWPALKEAFRGFKEKAS` `:` `2owx(A) : MELPRAFGLLLHPTSLPGPYGVGVLGQEARDFLRFLKEAGGRYWQVLPLGPTGYGDSPYQSFSAFAGNPYLIDLRPLAERGYVRLEDPGFPQGRVDYGLLYAWKWPALKEAFRGFKEKAS` `________________________________________________________________________________________________________________________` `__________________________________________________________________________________________213_________225_______________` `1esw(A) : PEEREAFAAFREREAWWLEDYALFMALKGAHGGLPWNRWPLPLRKREEKALREAKSALAEEVAFHAFTQWLFFRQWGALKAEAEALGIRIIGDMPIFVAEDSAEVWAHPEWFHLDEEGRP` `:` `2owx(A) : PEEREAFAAFREREAWWLEDYALFMALKGAHGGLPWNRWPLPLRKREEKALREAKSALAEEVAFHAFTQWLFFRQWGALKAEAEALGIRIIGDMPIFVAEDSAEVWAHPEWFHLDEEGRP` `__________________________________________________________________________________________213_________225_______________` `___246_____________________270_______________________296________________315____322_326______335_________________355_____` `1esw(A) : TVVAGVPPDYFSETGQRWGNPLYRWDVLEREGFSFWIRRLEKALELFHLVRIDHFRGFEAYWEIPASCPTAVEGRWVKAPGEKLFQKIQEVFGEVPVLAEDLGVITPEVEALRDRFGLPG` `:` `2owx(A) : TVVAGVPPDYFSETGQRWGNPLYRWDVLEREGFSFWIRRLEKALELFHLVRIDHFRGFEAYWEIPASCPTAVEGRWVKAPGEKLFQKIQEVFGEVPVLAEDLGVITPEVEALRDRFGLPG` `___246_____________________270_______________________296________________315____322_326______335_________________355_____` `________________________________________________________________________________________________________________________` `1esw(A) : MKVLQFAFDDGMENPFLPHNYPAHGRVVVYTGTHDNDTTLGWYRTATPHEKAFMARYLADWGITFREEEEVPWALMHLGMKSVARLAVYPVQDVLALGSEARMNYPGRPSGNWAWRLLPG` `:` `2owx(A) : MKVLQFAFD--mENPFLPHNYPAHGRVVVYTGTHDNDTTLGWYRTATPHEKAFMARYLADWGITFREEEEVPWALMHLGMKSVARLAVYPVQDVLALGSEARMNYPGRPSGNWAWRLLPG` `________________________________________________________________________________________________________________________` `____________________` `1esw(A) : ELSPEHGARLRAMAEATERL` `:` `2owx(A) : ELSPEHGARLRAMAEATERL` `____________________`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.

play backwards

pause

play forwards

Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	5.5
Translation (A)	0.2
Closure (%)	98.2
Bending Residues ( green )	213 - 218 225 - 226 246 - 253 270 - 279 296 - 301 315 - 316 322 - 323 326 - 333 335 - 337 355 - 356 358 - 359
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

Download and extract PyMOL PML script file

Download