Atp-Dependent Metalloprotease Ftsh

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Atp-Dependent Metalloprotease Ftsh
  Conformer 1
(PDB)
1iy0 (A)
  Conformer 2
(PDB)
2cea (F)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 162 1.04   154 - 325
2 67 0.71   326 - 392

Sequence


           ________________________________________________________________________________________________________________________ 
 1iy0(A) : ***TEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR 
         :                                                                                                                          
 2cea(F) : YKPSGNKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGR-- 
           ________________________________________________________________________________________________________________________ 

           __________________________________________________324___________________________________________________________________ 
 1iy0(A) : nDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEE 
         :                                                                                                                          
 2cea(F) : -dEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFEE 
           __________________________________________________329___________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1iy0(A) : AAS********************************************************************************************************************* 
         :                                                                                                                          
 2cea(F) : AIDRVIiSPAEKRIIAYHEAGHAVVSTVVPNGEPVHRISIIPRGYKALGyLVSRNELLDKLTALLGGRAAEEVVFGDVTSGAANDIERATEIARNMVCQLGMSEELGPLAWGrNYSEEVA 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________________                                                                  
 1iy0(A) : *******************************************************                                                                  
         :                                                                                                                          
 2cea(F) : SKIDEEVKKIVTNCYERAKEIIRKYRKQLDNIVEILLEKETIEGDELRRILSEEF                                                                  
           _______________________________________________________                                                                  

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
33.4
Translation
(A)
-0.6
Closure
(%)
16.2
Bending Residues
( green )
  324 - 326
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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