Atp-Dependent Metalloprotease Ftsh

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Atp-Dependent Metalloprotease Ftsh
  Conformer 1
(PDB)
1iy0 (A)
  Conformer 2
(PDB)
4ww0 (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 161 1.28   150 - 324
2 68 0.69   325 - 392

Sequence


           ________________________________________________________________________________________________________________________ 
 1iy0(A) : *TEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRnD 
         :                                                                                                                          
 4ww0(C) : IEEKPKVTFKDVAGIEEVKEEVKEIIEYLKDPVKFQKLGGRPPKGVLLYGEPGVGKTLLAKAIAGEAHVPFISVSGSD----FvGVGAARVRDLFETAKKHAPCMIFIDEIDAVGR---d 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________324_____________________________________________________________________ 
 1iy0(A) : EREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 
         :                                                                                                                          
 4ww0(C) : EREQTLNQLLVEMDGFDTSDGIIVIAATNRPDILDPALLRPGRFDRQIFIPKPDVRGRYEILKVHARNKKLAKDVDLEFVARATPGLTGADLENLLNEAALLAARKGKEEITMEEIEEAL 
           ________________________________________________324_____________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1iy0(A) : S*********************************************************************************************************************** 
         :                                                                                                                          
 4ww0(C) : DRmTISPKEKEKIAIHEAGHALMGLVSDDDDKVHKISIIPdKHIYDKKDLYNKILVLLGGRAAEEVFFGKDGITTGAENDLQRATDLAYRMVSMWGMSDKVGPIAIRaVDTSPDLLREID 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________________                                                              
 1iy0(A) : ***********************************************************                                                              
         :                                                                                                                          
 4ww0(C) : EEVRRIITEQYEKAKAIVEEYKEPLKAVVKKLLEKETITCEEFVEVFKLYGIELKDKCK                                                              
           ___________________________________________________________                                                              

Morph

Morph animation in progress.
Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
37.3
Translation
(A)
-0.3
Closure
(%)
5.7
Bending Residues
( green )
  324 - 326
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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