425Aa Long Hypothetical Proton Glutamate Symport Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 425Aa Long Hypothetical Proton Glutamate Symport Protein
  Conformer 1
(PDB)
2nwx (A)
  Conformer 2
(PDB)
2nww (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 339 0.63   16 - 92   96 - 308   312 - 324   374 - 414
2 55 2.05   93 - 95   309 - 311   325 - 373

Sequence


           _________________________________________________________________________________92_95__________________________________ 
 2nwx(A) : **VLQKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGGQQF-----pP 
         :                                                                                                                          
 2nww(A) : YPVLQKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGGQQFQPHQAPP 
           _________________________________________________________________________________92_95__________________________________ 

           ________________________________________________________________________________________________________________________ 
 2nwx(A) : LVHILLDIVPTNPFGALANGQVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVHVVGELAKVTAAVYVGLTLQILLVYFV 
         :                                                                                                                          
 2nww(A) : LVHILLDIVPTNPFGALANGQVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVHVVGELAKVTAAVYVGLTLQILLVYFV 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________306__311__________324_____________________________________________ 
 2nwx(A) : LLKIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKEMGISEGIYSFTLPLGATINMDGTALYQGVCTFFIANALGSHLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLAMVLHS 
         :                                                                                                                          
 2nww(A) : LLKIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKEMGISEGIYSFTLPLGATINMDGTALYQGVCTFFIANALGSHLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLAMVLHS 
           ______________________________________________________306__311__________324_____________________________________________ 

           _373___________________________________________                                                                          
 2nwx(A) : VGLPLTDPNVAAAYAMILGIDAILDMGRTMVNVTGDLTGTAIVAKTE                                                                          
         :                                                                                                                          
 2nww(A) : VGLPLTDPNVAAAYAMILGIDAILDMGRTMVNVTGDLTGTAIVAKTE                                                                          
           _373___________________________________________                                                                          

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
14.7
Translation
(A)
-0.2
Closure
(%)
51.2
Bending Residues
( green )
  92 - 93
  95 - 96
  306 - 309
  311 - 312
  324 - 325
  373 - 374
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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