Abc Transporter, Substrate Binding Protein (Amino Acid)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Abc Transporter, Substrate Binding Protein (Amino Acid)
  Conformer 1
(PDB)
3ip5 (A)
  Conformer 2
(PDB)
3ip6 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 301 0.3   3 - 138   142 - 179   196 - 208   213 - 233   243 - 334   346 - 346
2 43 0.45   139 - 141   180 - 195   209 - 212   234 - 242   335 - 345

Sequence


           ________________________________________________________________________________________________________________________ 
 3ip5(A) : MDVVIAVGAPLTGPNAAFGAQIQKGAEQAAKDINAAGGINGEQIKIVLGDDVSDPKQGISVANKFVADGVKFVVGHFNSGVSIPASEVYAENGILEITPAATNPVFTERGLWNTFRTCGR 
         :                                                                                                                          
 3ip6(A) : MDVVIAVGAPLTGPNAAFGAQIQKGAEQAAKDINAAGGINGEQIKIVLGDDVSDPKQGISVANKFVADGVKFVVGHFNSGVSIPASEVYAENGILEITPAATNPVFTERGLWNTFRTCGR 
           ________________________________________________________________________________________________________________________ 

           ______________137_141___________________________________179_____________195__________208_212______________229__________2 
 3ip5(A) : DDQQGGIAGKYLADHFKDAKVAIIHDKTPYGQGLADETKKAANAAGVTEVMYEGVNVGDKDFSALISKMKEAGVSIIYWGGLHTEAGLIIRQAADQGLKAKLVSGDGIVSNELASIAGDA 
         :                                                                                                                          
 3ip6(A) : DDQQGGIAGKYLADHFKDAKVAIIHDKTPYGQGLADETKKAANAAGVTEVMYEGVNVGDKDFSALISKMKEAGVSIIYWGGLHTEAGLIIRQAADQGLKAKLVSGDGIVSNELASIAGDA 
           ______________137_141___________________________________179_____________195__________208_212______________229__________2 

           42_________________________________________________________________________________________334________345___             
 3ip5(A) : VEGTLNTFGPDPTLRPENKELVEKFKAAGFNPEAYTLYSYAAMQAIAGAAKAAGSVEPEKVAEALKKGSFPTALGEISFDEKGDPKLPGYVMYEWKKGPDGKFTYIQQ             
         :                                                                                                                          
 3ip6(A) : VEGTLNTFGPDPTLRPENKELVEKFKAAGFNPEAYTLYSYAAMQAIAGAAKAAGSVEPEKVAEALKKGSFPTALGEISFDEKGDPKLPGYVMYEWKKGPDGKFTYIQQ             
           42_________________________________________________________________________________________334________345___             

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
3.2
Translation
(A)
0.0
Closure
(%)
99.7
Bending Residues
( green )
  137 - 139
  141 - 142
  179 - 180
  195 - 196
  208 - 209
  212 - 213
  229 - 234
  242 - 243
  334 - 335
  345 - 346
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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