Acetylglutamate Kinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Acetylglutamate Kinase
  Conformer 1
(PDB)
1oha (A)
  Conformer 2
(PDB)
2wxb (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 169 1.18   4 - 12   15 - 33   36 - 42   46 - 179
2 84 2.11   13 - 14   34 - 35   43 - 45   180 - 256

Sequence


           ________9______________________33_______42______________________________________________________________________________ 
 1oha(A) : MMNPLIIKLGGVLLDSEEALERLFSALVNYRESHQRPLVIVHGGGCVVDELMKGLNLPVKKKNGLRVTPADQIDIITGALAGTANKTLLAWAKKHQIAAVGLFLGDGDSVKVTQLDEELG 
         :                                                                                                                          
 2wxb(A) : *MNPLIIKLGGVLLDSEEALERLFSALVNYRESHQRPLVIVHGGGCVVDELMKGLNLPVKKKNGLRVTPADQIDIITGALAGTANKTLLAWAKKHQIAAVGLFLGDGDSVKVTQLDEELG 
           ________9______________________33_______42______________________________________________________________________________ 

           ________________________________________________________179_____________________________________________________________ 
 1oha(A) : HVGLAQPGSPKLINSLLENGYLPVVSSIGVTDEGQLMNVNADQAATALAATLGADLILLSDVSGILDGKGQRIAEMTAAKAEQLIEQGIITDGMIVKVNAALDAARTLGRPVDIASWRHA 
         :                                                                                                                          
 2wxb(A) : HVGLAQPGSPKLINSLLENGYLPVVSSIGVTDEGQLMNVNADQAATALAATLGADLILLSDVSGILDGKGQRIAEMTAAKAEQLIEQGIITDGMIVKVNAALDAARTLGRPVDIASWRHA 
           ________________________________________________________179_____________________________________________________________ 

           __________________                                                                                                       
 1oha(A) : EQLPALFNGMPMGTRILA                                                                                                       
         :                                                                                                                          
 2wxb(A) : EQLPALFNGMPMGTRILA                                                                                                       
           __________________                                                                                                       

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
24.1
Translation
(A)
0.0
Closure
(%)
71.0
Bending Residues
( green )
  9 - 21
  33 - 36
  42 - 48
  179 - 180
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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