DynDom - Protein Domain Motions

Actin-Like Protein 3

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Actin-Like Protein 3
Conformer 1 (PDB)	2p9l (A)
Conformer 2 (PDB)	2p9u (A)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	204	0.35	6 - 148 152 - 152 155 - 164 178 - 178 188 - 190 305 - 317 329 - 333 367 - 372 381 - 414
2	189	0.47	149 - 151 153 - 154 165 - 177 179 - 187 191 - 304 318 - 328 334 - 366 373 - 380

Sequence

`________________________________________________________________________________________________________________________` `2p9l(A) : AGRLPACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKEvMKGVDDLDFFIGDEAIEKPTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFE` `:` `2p9u(A) : *GRLPACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKEvMKGVDDLDFFIGDEAIEKPTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFE` `________________________________________________________________________________________________________________________` `_____________148____________164__________177_______187__________________________________________________________________` `2p9l(A) : SFNVPGLYIAVQAVLALAASWTSqVGERTLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVKEFNKYDTDGSKWI` `:` `2p9u(A) : SFNVPGLYIAVQAVLALAASWTSqVGERTLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVKEFNKYDTDGSKWI` `_____________148____________164__________177_______187__________________________________________________________________` `________________________________________________304__________317______326____333__________________________366__371______` `2p9l(A) : KQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSkPKPIDVQVITHHMQRYAV` `:` `2p9u(A) : KQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSkPKPIDVQVITHHMQRYAV` `________________________________________________304__________317______326____333__________________________366__371______` `380____________________________________` `2p9l(A) : WFGGSMLASTPEFYQVCHTKKDYEEIGPSICRHNPVFGV` `:` `2p9u(A) : WFGGSMLASTPEFYQVCHTKKDYEEIGPSICRHNPVFGV` `380____________________________________`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	2.6
Translation (A)	0.0
Closure (%)	46.2
Bending Residues ( green )	148 - 149 151 - 155 164 - 165 177 - 179 187 - 188 190 - 191 304 - 305 317 - 318 326 - 331 333 - 334 366 - 367 371 - 373 380 - 381
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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