Actin Alpha 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Actin Alpha 1
  Conformer 1
(PDB)
2hf3 (A)
  Conformer 2
(PDB)
3daw (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 226 0.66   10 - 18   29 - 30   93 - 100   107 - 111   130 - 131   137 - 336
2 128 0.84   6 - 9   19 - 28   31 - 92   101 - 106   112 - 129   132 - 136   337 - 369

Sequence


           _______9_______18________28______________________________________________________________92_____100___106__111__________ 
 2hf3(A) : DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR----------kDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 
         :                                                                                                                          
 3daw(A) : **ETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ 
           _______9_______18________28______________________________________________________________92_____100___106__111__________ 

           _____129____136_________________________________________________________________________________________________________ 
 2hf3(A) : IMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTEEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 
         :                                                                                                                          
 3daw(A) : IMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYE 
           _____129____136_________________________________________________________________________________________________________ 

           ____________________________________________________________________________________________336_________________________ 
 2hf3(A) : LKDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 
         :                                                                                                                          
 3daw(A) : LPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQE 
           ____________________________________________________________________________________________336_________________________ 

           ______________                                                                                                           
 2hf3(A) : YDESGPSIVHRKCF                                                                                                           
         :                                                                                                                          
 3daw(A) : YDEAGPSIVHRKCF                                                                                                           
           ______________                                                                                                           

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
7.7
Translation
(A)
-0.1
Closure
(%)
22.7
Bending Residues
( green )
  9 - 13
  18 - 19
  28 - 31
  92 - 93
  100 - 101
  106 - 107
  111 - 112
  129 - 132
  136 - 137
  336 - 337
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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