Adenylate Kinase Isoenzyme-3 (Gtp: Amp Phosphotransferase) 3 (E.C.2.7.4.10)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Adenylate Kinase Isoenzyme-3 (Gtp: Amp Phosphotransferase) 3 (E.C.2.7.4.10)
  Conformer 1
(PDB)
2ak3 (A)
  Conformer 2
(PDB)
2eck (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 160 4.24   8 - 123   162 - 205
2 38 1.24   124 - 161

Sequence


           ________________________________________________________________________________________________________________________ 
 2ak3(A) : GASARLLRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDVMTRLVLHELKNLTQYN-WLLDGFPRTLPQAEALDRA-YQIDTVINLNVPFE 
         :                                                                                                                          
 2eck(B) : ******MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDE 
           ________________________________________________________________________________________________________________________ 

           ___123________________________________158___________________________________________________________________             
 2ak3(A) : VIKQRLTARWIHPGSGRVYNIEFNPPKTMGIDDLTGEPLVQREDDRPETVVKRLKAYEAQTEPVLEYYRKKGVLETFSGTETNKIWPHVYAFLQTKLPQRSQETSVTP             
         :                                                                                                                          
 2eck(B) : LIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKILG********             
           ___120________________________________155___________________________________________________________________             

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
86.3
Translation
(A)
0.4
Closure
(%)
93.6
Bending Residues
( green )
  123 - 126
  158 - 162
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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