Adenylate Kinase (Adk) (E.C.2.7.4.3)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Adenylate Kinase (Adk) (E.C.2.7.4.3)
  Conformer 1
(PDB)
1ank (A)
  Conformer 2
(PDB)
1zin  
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 183 2.65   3 - 124   146 - 212
2 21 0.91   125 - 145

Sequence


           ________________________________________________________________________________________________________________________ 
 1ank(A) : MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMK----EAGINVDYVLEFDVPDELI 
         :                                                                                                                          
 1zin    : MNLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVTIGIVRERLSKDDCQNGFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVL 
           ________________________________________________________________________________________________________________________ 

           _____124_________________144___________________________________________________________________________                  
 1ank(A) : VDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRL-VEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKILG****                  
         :                                                                                                                          
 1zin    : MERLTGRRICRNCGATYHLIFHPPAKPGVCDKCGGELYQRADDNEATVANRLEVNMKQMK-PLVDFYEQKGYLRN-----INGEQDMEKVFADIRELLGGLAR                  
           _____128_________________148___________________________________________________________________________                  

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
22.6
Translation
(A)
0.1
Closure
(%)
89.3
Bending Residues
( green )
  124 - 125
  144 - 146
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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