Adp-Specific Phosphofructokinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Adp-Specific Phosphofructokinase
  Conformer 1
(PDB)
1u2x (A)
  Conformer 2
(PDB)
3drw (A)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 396 0.52   28 - 306   342 - 422   426 - 426   430 - 468
2 41 0.4   307 - 341   423 - 425   427 - 429

Sequence


           ________________________________________________________________________________________________________________________ 
 1u2x(A) : ***********IPEHLSIYTAYNANIDAIVKLNQETIQNLINAFDPDEVKRRIEEYPREINEPIDFVARLVHTLKLGKPAAVPLVNEK-nEWFDKTFRYEEERLGGQAGIIANTLAGLKI 
         :                                                                                                                          
 3drw(A) : SGRENLYFQGmIPEHLSIYTAYNANIAAIVKLNQETIQNLINAFDPDEVKRRIEEYPREINEPIDFVARLVHTLKLGKPAAVPLVNEKMNEWFDKTFRYEEERLGGQAGIIANTLAGLKI 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1u2x(A) : RKVIAYTPFLPKRLAELFKKGVLYPVVENGELQFKPIQEAYREGDPLKINRIFEFRKGLKFKLGDETIEIPNSGRFIVSARFESISRIETREDIKPFLGEIGKEVDGAIFSGYQGLRTKY 
         :                                                                                                                          
 3drw(A) : RKVIAYTPFLPKRLAELFKKGVLYPVVENGELQFKPIQEAYREGDPLKINRIFEFRKGLKFKLGDETIEIPNSGRFIVSARFESISRIETREDIKPFLGEIGKEVDGAIFSGYQGLRTKY 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________306________________________________341_______________________________ 
 1u2x(A) : SDGKDANYYLRRAKEDIIEFKEKDVKIHVEFASVQDRKLRKKIITNILPFVDSVGIDEAEIAQILSVLGYRELADRIFTYNRLEDSILGG-iILDELNFEILQVHTTYYL-yITHRDNPL 
         :                                                                                                                          
 3drw(A) : SDGKDANYYLRRAKEDIIEFKEKDVKIHVEFASVQDRKLRKKIITNILPFVDSVGIDEAEIAQILSVLGYRELADRIFTYNRLEDSILGGMIILDELNFEILQVHTTYYLMYITHRDNPL 
           ___________________________________________________284________________________________319_______________________________ 

           _______________________________________________422____429___________________________________________                     
 1u2x(A) : SEEELAKSLEFGTTLAAARASLGDIRGPDDYKVGLKVPFNERSEYVKLRFEEAKSRLR-rEYKVVVIPTRLVQNPVLTVGLGDTISAGAFLTYLEFLKRH                     
         :                                                                                                                          
 3drw(A) : SEEELAKSLEFGTTLAAARASLGDIRGPDDYKVGLKVPFNERSEYVKLRFEEAKSRLRMREYKVVVIPTRLVQNPVLTVGLGDTISAGAFLTYLEFLKRH                     
           _______________________________________________400____407___________________________________________                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
5.3
Translation
(A)
0.1
Closure
(%)
60.2
Bending Residues
( green )
  306 - 307
  341 - 342
  422 - 423
  425 - 427
  429 - 430
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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