Alpha-L-Arabinofuranosidase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Alpha-L-Arabinofuranosidase
  Conformer 1
(PDB)
2vrq (A)
  Conformer 2
(PDB)
2vrq (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 421 0.23   6 - 79   81 - 83   94 - 105   107 - 110   112 - 115   119 - 131   136 - 137   172 - 195   197 - 198   211 - 493
2 67 0.23   80 - 80   84 - 93   106 - 106   111 - 111   116 - 118   132 - 135   138 - 171   196 - 196   199 - 210

Sequence


           __________________________________________________________________________79__83___88_____________104___110__115________ 
 2vrq(A) : ASRVVVNADRVKGTINRNIYGHFSEHLGRCIYEGLWVGEDSPIPNTNGIRNDVLEALKQMKIPVLRWPGGCFADEYHWKDGVGPREKRKRMVNTHWGGVIENNHFGTHEFMMLCELLGCE 
         :                                                                                                                          
 2vrq(B) : ASRVVVNADRVKGTINRNIYGHFSEHLGRCIYEGLWVGEDSPIPNTNGIRNDVLEALKQMKIPVLRWPGGCFADEYHWKDGVGPREKRKRMVNTHWGGVIENNHFGTHEFMMLCELLGCE 
           __________________________________________________________________________79__83___88_____________104___110__115________ 

           _____131_135_________________________________171_____________________195____________210_________________________________ 
 2vrq(A) : PYISGNVGSGTVQEMSEWVEYITFDGESPMANWRRENGREKPWRIKYWGVGNQNWGCGGNMRAEYYADLYRQFQTYLRNYGDNKLHKIACGANTADYHWTEVLMKQAAPFMHGLSLHYYT 
         :                                                                                                                          
 2vrq(B) : PYISGNVGSGTVQEMSEWVEYITFDGESPMANWRRENGREKPWRIKYWGVGNQNWGCGGNMRAEYYADLYRQFQTYLRNYGDNKLHKIACGANTADYHWTEVLMKQAAPFMHGLSLHYYT 
           _____131_135_________________________________171_____________________195____________210_________________________________ 

           ________________________________________________________________________________________________________________________ 
 2vrq(A) : VPGPWEKKGPATGFTTDEWWVTLKKALFMDRLVTKHSAIMDVYDPDKRIDLIVDEWGTWYDVEPGTNPGFLYQQNSIRDALVAGATLHIFHRHCDRVRMANIAQLVNVLQSVILTEGERM 
         :                                                                                                                          
 2vrq(B) : VPGPWEKKGPATGFTTDEWWVTLKKALFMDRLVTKHSAIMDVYDPDKRIDLIVDEWGTWYDVEPGTNPGFLYQQNSIRDALVAGATLHIFHRHCDRVRMANIAQLVNVLQSVILTEGERM 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2vrq(A) : LLTPTYHVFNMFKVHQDAELLDTWESVERTGPEGELPKVSVSASRAADGKIHISLCNLDFETGASVDIELRGLNGGVSATGTTLTSGRIDGHNTFDEPERVKPAPFRDFKLEGGHLNASL 
         :                                                                                                                          
 2vrq(B) : LLTPTYHVFNMFKVHQDAELLDTWESVERTGPEGELPKVSVSASRAADGKIHISLCNLDFETGASVDIELRGLNGGVSATGTTLTSGRIDGHNTFDEPERVKPAPFRDFKLEGGHLNASL 
           ________________________________________________________________________________________________________________________ 

           _____________                                                                                                            
 2vrq(A) : PPMSVTVLELTAG                                                                                                            
         :                                                                                                                          
 2vrq(B) : PPMSVTVLELTAG                                                                                                            
           _____________                                                                                                            

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
1.8
Translation
(A)
-0.1
Closure
(%)
39.5
Bending Residues
( green )
  79 - 81
  83 - 84
  88 - 94
  104 - 108
  110 - 112
  115 - 116
  118 - 121
  131 - 132
  135 - 138
  171 - 172
  195 - 199
  210 - 211
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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