Anhydro-N-Acetylmuramic Acid Kinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Anhydro-N-Acetylmuramic Acid Kinase
  Conformer 1
(PDB)
3qbw (A)
  Conformer 2
(PDB)
3qbx (A)
  Window Length 13
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 192 0.33   8 - 144   226 - 244   318 - 324   328 - 356
2 138 0.33   145 - 225   245 - 317   325 - 327

Sequence


           ________________________________________________________________________________________________________________________ 
 3qbw(A) : PRYLGLMSGTSLDGMDIVLIEQGDRTTLLASHYLPMPAGLREDILALCVPGPDEIARAAEVEQRWVALAAQGVRELLLQQQMSPDEVRAIGSHGQTIRHEPARHFTVQIGNPALLAELTG 
         :                                                                                                                          
 3qbx(A) : PRYLGLMSGTSLDGMDIVLIEQGDRTTLLASHYLPMPAGLREDILALCVPGPDEIARAAEVEQRWVALAAQGVRELLLQQQMSPDEVRAIGSHGQTIRHEPARHFTVQIGNPALLAELTG 
           ________________________________________________________________________________________________________________________ 

           ____________________144__________________________________________________________________________225_________237________ 
 3qbw(A) : IDVVADFRRRDVAAGGQGAPLVPAFHQALF-sRAVLNIGGFSNVSLL------rGFDCGPGNVLMDAWIHHQRGEHFDRDGAWAASGQVNHALLASLLADEFFAARGPKSTGRERFNLPW 
         :                                                                                                                          
 3qbx(A) : IDVVADFRRRDVAAGGQGAPLVPAFHQALFGsRAVLNIGGFSNVSLLSPGKPVRGFDCGPGNVLMDAWIHHQRGEHFDRDGAWAASGQVNHALLASLLADEFFAARGPKSTGRERFNLPW 
           ____________________144__________________________________________________________________________225_________237________ 

           _____________________________________________________________________317____324_______________________________________   
 3qbw(A) : LQEHLARHPALPAADIQATLLELSARSISESLLDAQPD---vLVCGGGAFNTALMKRLAMLMPEARVASTDEYGIPPAWMEGMAFAWLAHRFLERLPGNCPDVTGALGPRTLGALYP*   
         :                                                                                                                          
 3qbx(A) : LQEHL-----lPAADIQATLLELSARSISESLLDAQPDCEEVLVCGGGAFNTALMKRLAMLMPEARVASTDEYGIPPAWMEGMAFAWLAHRFLERLPGNCPDVTGALGPRTLGALYPA   
           _____________________________________________________________________317____324_______________________________________   

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
4.1
Translation
(A)
0.1
Closure
(%)
66.7
Bending Residues
( green )
  144 - 145
  225 - 226
  237 - 245
  317 - 318
  324 - 328
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

Download and extract PyMOL PML script file Download