Arginine Kinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Arginine Kinase
  Conformer 1
(PDB)
6ky2 (A)
  Conformer 2
(PDB)
1m15 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 250 1.31   4 - 100   107 - 107   126 - 235   240 - 281
2 100 3.86   101 - 106   108 - 125   236 - 239   282 - 355

Sequence


           _____________________________________________________________________________________________________100___106__________ 
 6ky2(A) : HHHHMVDAAVAEKLEAGFQKLQEATNCKSLLKKHLTREIFDKIKDLKTSFGSTLLDVIQSGVENLDSGFGVYAPDAEAYSVFNDLFEPMICDYHTGFKPGDAHPPRDFGDLETFGNLDPE 
         :                                                                                                                          
 1m15(A) : *****VDQATLDKLEAGFKKLQEASDCKSLLKKHLTKDVFDSIKNKKTGMGATLLDVIQSGVENLDSGVGIYAPDAESYRTFGPLFDPIIDDYHGGFKLTDKHPPKQWGDINTLVGLDPA 
           _____________________________________________________________________________________________________100___106__________ 

           ______125__________________________________________________________________________________________________________234__ 
 6ky2(A) : GAFIVSTRVRCGRSLAGYAFNPCLTEANYKEMEEKVVASLSSLEGELKGTYYPLTGMTKEVQTQLIQDRFLFKEGDRFLQAANACRYWPTGRGIYHNDAKTFLVWCNEEDHLRIISMQKG 
         :                                                                                                                          
 1m15(A) : GQFIISTRVRCGRSLQGYPFNPCLTAEQYKEMEEKVSSTLSSMEDELKGTYYPLTGMSKATQQQLIDDHFLFKEGDRFLQTANACRYWPTGRGIFHNDAKTFLVWVNEEDHLRIISMQKG 
           ______125__________________________________________________________________________________________________________234__ 

           239_______________________________________281___________________________________________________________________________ 
 6ky2(A) : GDLKAVYARLVNAINEIEKRIPFSHHDKYGFLTFCPTNLGTTIRASVHIALPKLAADLAKLa--AGKFNLQVRGTAGEHTEAEGGVYDISNKRRMGLTEYQAVKEMYDGLQELIRMEKEA 
         :                                                                                                                          
 1m15(A) : GDLKTVYKRLVTAVDNIESKLPFSHDDRFGFLTFCPTNLGTTMRASVHIQLPKLAKDRKVLEDIASKFNLQVRGTRGEHTESEGGVYDISNKRRLGLTEYQAVREMQDGILEMIKMEKAA 
           239_______________________________________281___________________________________________________________________________ 

           _                                                                                                                        
 6ky2(A) : A                                                                                                                        
         :                                                                                                                          
 1m15(A) : A                                                                                                                        
           _                                                                                                                        

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
24.8
Translation
(A)
-0.6
Closure
(%)
95.4
Bending Residues
( green )
  100 - 101
  106 - 108
  125 - 126
  234 - 236
  239 - 241
  281 - 282
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download