Aspartyl Trna Synthetase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Aspartyl Trna Synthetase
  Conformer 1
(PDB)
1eqr (A)
  Conformer 2
(PDB)
1eqr (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 361 1.38   3 - 236   238 - 251   253 - 269   426 - 426   428 - 431   436 - 438   449 - 450   455 - 458   461 - 465   472 - 474   483 - 489   502 - 507   509 - 510   528 - 586
2 223 1.2   237 - 237   252 - 252   270 - 425   427 - 427   432 - 435   439 - 448   451 - 454   459 - 460   466 - 471   475 - 482   490 - 501   508 - 508   511 - 527

Sequence


           ________________________________________________________________________________________________________________________ 
 1eqr(A) : MRTEYCGQLRLSHVGQQVTLCGWVNRRRDLGSLIFIDMRDREGIVQVFFDPDRADALKLASELRNEFCIQVTGTVRARDEKNINRDMATGEIEVLASSLTIINRADVLPLDSNHVNTEEA 
         :                                                                                                                          
 1eqr(B) : MRTEYCGQLRLSHVGQQVTLCGWVNRRRDLGSLIFIDMRDREGIVQVFFDPDRADALKLASELRNEFCIQVTGTVRARDEKNINRDMATGEIEVLASSLTIINRADVLPLDSNHVNTEEA 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________________________________________________________________236____ 
 1eqr(A) : RLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMT 
         :                                                                                                                          
 1eqr(B) : RLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMT 
           _________________________________________________________________________________________________________________236____ 

           ________251_______________269___________________________________________________________________________________________ 
 1eqr(A) : APQVREVMEALVRHLWLEVKGVDLGDFPVMTFAEAERRYGSDKPDLRNPMELTDVADLLKSVEFAVFAGPANDPKGRVAALRVPGGASLTRKQIDEYGNFVKIYGAKGLAYIKVNERAKG 
         :                                                                                                                          
 1eqr(B) : APQVREVMEALVRHLWLEVKGVDLGDFPVMTFAEAERRYGSDKPDLRNPMELTDVADLLKSVEFAVFAGPANDPKGRVAALRVPGGASLTRKQIDEYGNFVKIYGAKGLAYIKVNERAKG 
           ________251_______________269___________________________________________________________________________________________ 

           ______________________________________________________________425___431_435__________448___454_458____465___471________4 
 1eqr(A) : LEGINSPVAKFLNAEIIEDILDRTAAQDGDMIFFGADNKKIVADAMGALRLKVGKDLGLTDESKWAPLWVIDFPMFEDDGEGGLTAMHHPFTSPKDMTAAELKAAPENAVANAYDMVING 
         :                                                                                                                          
 1eqr(B) : LEGINSPVAKFLNAEIIEDILDRTAAQDGDMIFFGADNKKIVADAMGALRLKVGKDLGLTDESKWAPLWVIDFPMFEDDGEGGLTAMHHPFTSPKDMTAAELKAAPENAVANAYDMVING 
           ______________________________________________________________425___431_435__________448___454_458____465___471________4 

           82____489_________501__506__________________527_______________________________________________________________           
 1eqr(A) : YEVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPKTTAAACLMTEAPSFANPTALAELSIQVVKKAENN           
         :                                                                                                                          
 1eqr(B) : YEVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPKTTAAACLMTEAPSFANPTALAELSIQVVKKAENN           
           82____489_________501__506__________________527_______________________________________________________________           

Morph

Morph animation in progress.
Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
10.7
Translation
(A)
0.6
Closure
(%)
96.1
Bending Residues
( green )
  236 - 238
  251 - 253
  269 - 270
  425 - 428
  431 - 432
  435 - 436
  438 - 443
  448 - 451
  454 - 455
  458 - 461
  465 - 469
  471 - 472
  474 - 475
  482 - 483
  489 - 490
  501 - 502
  506 - 512
  527 - 528
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

Download and extract PyMOL PML script file Download