Asp/glu-Specific Dipeptidyl-Peptidase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Asp/glu-Specific Dipeptidyl-Peptidase
  Conformer 1
(PDB)
5jxk (B)
  Conformer 2
(PDB)
5jwi (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 499 1.04   24 - 294   311 - 313   317 - 321   324 - 324   326 - 332   336 - 339   341 - 384   542 - 714
2 166 1.36   295 - 310   314 - 316   322 - 323   325 - 325   333 - 335   340 - 340   385 - 541

Sequence


           ________________________________________________________________________________________________________________________ 
 5jxk(B) : DGGMWLMQQINGQVARMKSLGMQLEAADIYNPNGSSLKDAVVMFDGGCTGVLVSNQGLLLTNHHCGYDQIQKHSSVQHNYLKDGFWSYSLAEELVNPGLEVEIVDEITDVTAAVKKELER 
         :                                                                                                                          
 5jwi(B) : DGGMWLMQQINGQVARMKSLGMQLEAADIYNPNGSSLKDAVVMFDGGCTGVLVSNQGLLLTNHHCGYDQIQKHSSVQHNYLKDGFWSYSLAEELVNPGLEVEIVDEITDVTAAVKKELER 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 5jxk(B) : ---pSGLEFLSPRYLSSLAPEIV----aSRPGYRYEIKAFYGGNRYYMFTKKVFRDVRLVAAPPSSIGKFGSDTDNWAWPRHTGDFSIFRLYADKNGNPAEYSKDNVPYRPKRWVKVNAQ 
         :                                                                                                                          
 5jwi(B) : IKKPSGLEFLSPRYLSSLAPEIVGKKAASRPGYRYEIKAFYGGNRYYMFTKKVFRDVRLVAAPPSSIGKFGSDTDNWAWPRHTGDFSIFRLYADKNGNPAEYSKDNVPYRPKRWVKVNAQ 
           ________________________________________________________________________________________________________________________ 

           ______________________________294_____________310___316__321________332____339__________________________________________ 
 5jxk(B) : GVKEGDFALIMGYPGTTYKFFTADEVTEWSEIDNNIRIEMRGILQDVMLREMLADPKINIMYAAKYASSQNGYKRAQGANWAIRRRSLREIKLAQQQEVLAWAKQKGIATTEEAVRAISK 
         :                                                                                                                          
 5jwi(B) : GVKEGDFALIMGYPGTTYKFFTADEVTEWSEIDNNIRIEMRGILQDVMLREMLADP--nIMYAAKYASSQNGYKRAQGANWAIRRRSLREIKLAQQQEVLAWAKQKGIATTEEAVRAISK 
           ______________________________294_____________310___316__321________332____339__________________________________________ 

           384_____________________________________________________________________________________________________________________ 
 5jxk(B) : AIEGRQDLRMRQRYLLEGILMGIEMSNAPAADSDIArREAGLQSIRKQFEAFFNKDYSPEVEKDQLAIALLTRYAERIPAEKQPISIREGIAEYGSAKAYVEMIFDKSIYASRERFEEFM 
         :                                                                                                                          
 5jwi(B) : AIEGRQDLRMRQRYLLEGILMGIEMSNAPAADSD-------lQSIRKQFEAFFNKDYSPEVEKDQLAIALLTRYAERIPAEKQPI---eGIAEYGSAKAYVEMIFDKSIYASRERFEEFM 
           384_____________________________________________________________________________________________________________________ 

           ______________________________541_______________________________________________________________________________________ 
 5jxk(B) : KNPDRDRLLRDPMSRFAASVAYEHQKLAKEVAAFDAPLAAAQRSYVASVLDMKGQPNLAPDANLTLRFTYGEIKGYQPRDVVTYGAKSTLEGVMEKEDPNNWEYVVDPKLKALYEAKNYG 
         :                                                                                                                          
 5jwi(B) : KNPDRDRLLRDPMSRFAASVAYEHQKLAKEVAAFDAPLAAAQRSYVASVLDMKGQPNLAPDANLTLRFTYGEIKGYQPRDVVTYGAKSTLEGVMEKEDPNNWEYVVDPKLKALYEAKNYG 
           ______________________________541_______________________________________________________________________________________ 

           _________________________________________________________________________________________                                
 5jxk(B) : RYANSDGSMPVNFCATTHTTGGNAGSPVMNARGELIGLNFDRNWEGVGGDIEYLPNYQRSIILDIRYLLFIIDKFAGCQRLIDEIQPQ*                                
         :                                                                                                                          
 5jwi(B) : RYANSDGSMPVNFCATTHTTGGNAGSPVMNARGELIGLNFDRNWEGVGGDIEYLPNYQRSIILDIRYLLFIIDKFAGCQRLIDEIQPQF                                
           _________________________________________________________________________________________                                

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
17.2
Translation
(A)
-0.4
Closure
(%)
92.1
Bending Residues
( green )
  294 - 295
  310 - 311
  313 - 314
  316 - 317
  321 - 326
  332 - 333
  335 - 336
  339 - 341
  384 - 385
  541 - 542
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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