DynDom - Protein Domain Motions

Atp Synthase Subunit Beta, Mitochondrial

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Atp Synthase Subunit Beta, Mitochondrial
Conformer 1 (PDB)	5are (E)
Conformer 2 (PDB)	5ari (E)
Window Length	7
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	292	1.75	12 - 133 142 - 152 159 - 162 174 - 175 179 - 180 182 - 206 210 - 210 212 - 330 339 - 342 347 - 348
2	167	2.07	134 - 141 153 - 158 163 - 173 176 - 178 181 - 181 207 - 209 211 - 211 331 - 338 343 - 346 349 - 470

Sequence

`________________________________________________________________________________________________________________________` `5are(E) : TTGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSV` `:` `5ari(E) : TTGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSV` `________________________________________________________________________________________________________________________` `__133_____141________152___158____________173__178_________________________206__________________________________________` `5are(E) : EQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEG` `:` `5ari(E) : EQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEG` `__133_____141________152___158____________173__178_________________________206__________________________________________` `_______________________________________________________________________________330_____338_342_346______________________` `5are(E) : QDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGSEHY` `:` `5ari(E) : QDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGSEHY` `_______________________________________________________________________________330_____338_342_346______________________` `__________________________________________________________________________________________________________` `5are(E) : DVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLA` `:` `5ari(E) : DVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLA` `__________________________________________________________________________________________________________`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	18.7
Translation (A)	1.0
Closure (%)	65.6
Bending Residues ( green )	133 - 135 141 - 147 152 - 153 158 - 163 173 - 176 178 - 182 206 - 207 209 - 212 330 - 331 338 - 339 342 - 343 346 - 349
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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