Benzoylformate Decarboxylase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Benzoylformate Decarboxylase
  Conformer 1
(PDB)
2fwn (A)
  Conformer 2
(PDB)
3f6b (X)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 496 0.18   5 - 453   455 - 455   476 - 522
2 21 0.21   454 - 454   456 - 475

Sequence


           ________________________________________________________________________________________________________________________ 
 2fwn(A) : ASVHGTTYELLRRQGIDTVFGNPG-nELPFLKDFPEDFRYILALQEACVVGIADGYAQASRKPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRP 
         :                                                                                                                          
 3f6b(X) : ASVHGTTYELLRRQGIDTVFGNPGSNELPFLKDFPEDFRYILALQEACVVGIADGYAQASRKPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRP 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2fwn(A) : LVKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQSHHLFDRHVSSSVRLNDQDLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPSAPRCP 
         :                                                                                                                          
 3f6b(X) : LVKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQSHHLFDRHVSSSVRLNDQDLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPSAPRCP 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2fwn(A) : FPTRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTRLISVTCDPLEAARAPMGDAIVADIGAMASALANLVEESSRQLPTAAPEPAKVDQDAGRLHPETVFDT 
         :                                                                                                                          
 3f6b(X) : FPTRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTRLISVTCDPLEAARAPMGDAIVADIGAMASALANLVEESSRQLPTAAPEPAKVDQDAGRLHPETVFDT 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________________________________________453___________________475______ 
 2fwn(A) : LNDMAPENAIYLNESTSTTAQMWQRLNMRNPGSYYFCAAGGLGFALPAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNNGTYGALRWFAGVLEAENVPGLDVPGI 
         :                                                                                                                          
 3f6b(X) : LNDMAPENAIYLNESTSTTAQMWQRLNMRNPGSYYFCAAGGLGFALPAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNNGTYGALRWFAGVLEAENVPGLDVPGI 
           _________________________________________________________________________________________453___________________475______ 

           _____________________________________________                                                                            
 2fwn(A) : DFRALAKGYGVQALKADNLEQLKGSLQEALSAKGPVLIEVSTVS*                                                                            
         :                                                                                                                          
 3f6b(X) : DFRALAKGYGVQALKADNLEQLKGSLQEALSAKGPVLIEVSTVSP                                                                            
           _____________________________________________                                                                            

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
3.4
Translation
(A)
0.0
Closure
(%)
69.5
Bending Residues
( green )
  453 - 456
  475 - 476
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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