Bovine Mitochondrial F1-Atpase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Bovine Mitochondrial F1-Atpase
  Conformer 1
(PDB)
1h8h (E)
  Conformer 2
(PDB)
1mab (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 287 1.81   11 - 131   148 - 151   172 - 329   431 - 434
2 161 2.06   132 - 147   152 - 171   330 - 430   435 - 458

Sequence


           ________________________________________________________________________________________________________________________ 
 1h8h(E) : ********TTGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEA 
         :                                                                                                                          
 1mab(B) : SAAPKAGTATGQIVAVIGAVVDVQFDEGLPPILNALEVQGRESRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAPIHAEA 
           ________________________________________________________________________________________________________________________ 

           ________131_____________147_151_________________171_____________________________________________________________________ 
 1h8h(E) : PEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVA 
         :                                                                                                                          
 1mab(B) : PEFIEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVA 
           ________131_____________147_151_________________171_____________________________________________________________________ 

           ______________________________________________________________________________________329_______________________________ 
 1h8h(E) : EYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDP 
         :                                                                                                                          
 1mab(B) : EYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDP 
           ______________________________________________________________________________________329_______________________________ 

           ___________________________________________________________________430_______________________________________________    
 1h8h(E) : NIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLA***    
         :                                                                                                                          
 1mab(B) : NIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDeLSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHMGKLVPLKETIKGFQQILAGDYDHLPEQAFYMVGPIEEAVAKADKLAEEH    
           ___________________________________________________________________430_______________________________________________    

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
27.2
Translation
(A)
1.1
Closure
(%)
60.3
Bending Residues
( green )
  131 - 132
  147 - 148
  151 - 152
  171 - 172
  329 - 330
  430 - 435
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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