Bromodomain-Containing Protein 4

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Bromodomain-Containing Protein 4
  Conformer 1
(PDB)
3mxf (A)
  Conformer 2
(PDB)
3p5o (A)
  Window Length 13
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 64 0.12   63 - 83   104 - 134   149 - 160
2 23 0.14   84 - 103   135 - 137

Sequence


           ________________________________________83_________________103____________________________134___________________________ 
 3mxf(A) : SMNPPPPETSNPNKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKI 
         :                                                                                                                          
 3p5o(A) : SMNPPPPETSNPNKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKI 
           ________________________________________83_________________103____________________________134___________________________ 

           _______                                                                                                                  
 3mxf(A) : NELPTEE                                                                                                                  
         :                                                                                                                          
 3p5o(A) : NELPTEE                                                                                                                  
           _______                                                                                                                  

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
2.1
Translation
(A)
0.0
Closure
(%)
86.7
Bending Residues
( green )
  83 - 84
  103 - 105
  134 - 149
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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