Calcium-Gated Potassium Channel Mthk

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calcium-Gated Potassium Channel Mthk
  Conformer 1
(PDB)
2fy8 (A)
  Conformer 2
(PDB)
3rbz (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 131 1.46   117 - 247
2 72 0.7   263 - 334

Sequence


           ________________________________________________________________________________________________________________________ 
 2fy8(A) : *******************************************************************SRHVVICGWSESTLECLRELRGSEVFVLAEDENVRKKVLRSGANFVHGDPTRV 
         :                                                                                                                          
 3rbz(A) : LLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIATFAVAVrHVVICGWSESTLECLRELRGSEVFVLAEDENVRKKVLRSGANFVHGDPTRV 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________________________________247________________________________________ 
 2fy8(A) : SDLEKANVRGARAVIVNLESDSETIHCILGIRKIDESVRIIAEAERYENIEQLRMAGADQVISPFVISGRLMSRSIDDGYEAMFVQDVLAEESTRRMVEVPIPEGSKLEGVSVLDADIHD 
         :                                                                                                                          
 3rbz(A) : SDLEKANVRGARAVIVDLESDSETIHCILGIRKIDESVRIIAEAERYENIEQLRMAGADQVISPFVISGRLMSRSIDDGYEAMFVQDVLAEESTRRMVEVPIPEGSKLEGVSVLDADIHD 
           _____________________________________________________________________________247________________________________________ 

           _________________________________________________                                                                        
 2fy8(A) : VTGVIIIGVGRGDELIIDPPRDYSFRAGDIILGIGKPEEIERLKNYISA                                                                        
         :                                                                                                                          
 3rbz(A) : VTGVIIIGVGRGDELIIDPPRDYSFRAGDIILGIGKPEEIERLKNYISA                                                                        
           _________________________________________________                                                                        

Morph

Morph animation in progress.
Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
20.4
Translation
(A)
0.1
Closure
(%)
2.3
Bending Residues
( green )
  247 - 263
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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