Calmodulin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calmodulin
  Conformer 1
(PDB)
1k90 (D)
  Conformer 2
(PDB)
1ooj (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 45 2.12   7 - 28   57 - 60   62 - 80
2 29 1.82   29 - 56   61 - 61
3 63 0.91   81 - 143

Sequence


           ______________________28__________________________56__60_________________79_____________________________________________ 
 1k90(D) : TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEM 
         :                                                                                                                          
 1ooj(A) : TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEM 
           ______________________29__________________________57__61_________________80_____________________________________________ 

           _______________________                                                                                                  
 1k90(D) : IREADIDGDGQVNYEEFVQMMTA                                                                                                  
         :                                                                                                                          
 1ooj(A) : IREADIDGDGQVNYEEFVTMM**                                                                                                  
           _______________________                                                                                                  

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
50.7
Translation
(A)
3.1
Closure
(%)
76.2
Bending Residues
( green )
  28 - 30
  56 - 57
  60 - 62
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
78.9
Translation
(A)
3.6
Closure
(%)
12.0
Bending Residues
( green )
  79 - 82
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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