Calmodulin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calmodulin
  Conformer 1
(PDB)
5k8q (A)
  Conformer 2
(PDB)
1y0v (H)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 37 1.87   5 - 27   62 - 75
2 34 1.88   28 - 61
3 67 1.96   76 - 145

Sequence


           ________________________27________________________________61____________75______________________________________________ 
 5k8q(A) : DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMK---sEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEV 
         :                                                                                                                          
 1y0v(H) : *AATEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEV 
           ________________________27________________________________61____________75______________________________________________ 

           ___________________________                                                                                              
 5k8q(A) : DEMIREADIDGDGQVNYEEFVQMMTA*                                                                                              
         :                                                                                                                          
 1y0v(H) : DEMIREADIDGDGQVNYEEFVQMMTAK                                                                                              
           ___________________________                                                                                              

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
45.8
Translation
(A)
0.4
Closure
(%)
85.7
Bending Residues
( green )
  27 - 28
  61 - 62
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
177.9
Translation
(A)
3.3
Closure
(%)
96.5
Bending Residues
( green )
  75 - 82
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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