Calmodulin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calmodulin
  Conformer 1
(PDB)
5k8q (A)
  Conformer 2
(PDB)
3bya (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 69 0.56   5 - 73
2 64 1.06   81 - 144

Sequence


           ___________________________________________________________________70___________________________________________________ 
 5k8q(A) : DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKsEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEM 
         :                                                                                                                          
 3bya(A) : *QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMA----sEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEM 
           ___________________________________________________________________70___________________________________________________ 

           _______________________                                                                                                  
 5k8q(A) : IREADIDGDGQVNYEEFVQMMTA                                                                                                  
         :                                                                                                                          
 3bya(A) : IREADIDGDGQVNYEEFVQMMT*                                                                                                  
           _______________________                                                                                                  

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
175.8
Translation
(A)
0.4
Closure
(%)
81.3
Bending Residues
( green )
  70 - 81
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download