Calmodulin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calmodulin
  Conformer 1
(PDB)
1cm1 (A)
  Conformer 2
(PDB)
1g4y (R)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 43 2.97   80 - 106   129 - 144
2 74 2.4   6 - 79
3 22 1.84   107 - 128

Sequence


           ________________________________________________________________________74_____________________________106______________ 
 1cm1(A) : ***LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEE 
         :                                                                                                                          
 1g4y(R) : ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEE 
           ________________________________________________________________________74_____________________________106______________ 

           _____128___________________                                                                                              
 1cm1(A) : VDEMIREADIDGDGQVNYEEFVQMMT*                                                                                              
         :                                                                                                                          
 1g4y(R) : VDEMIREADIDGDGQVNYEEFVQMMTA                                                                                              
           _____128___________________                                                                                              

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
51.0
Translation
(A)
-2.9
Closure
(%)
66.6
Bending Residues
( green )
  74 - 83
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
46.0
Translation
(A)
0.3
Closure
(%)
81.9
Bending Residues
( green )
  106 - 107
  128 - 129
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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