Calmodulin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calmodulin
  Conformer 1
(PDB)
5sy1 (C)
  Conformer 2
(PDB)
3wfn (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 66 3.71   78 - 145
2 41 3.12   4 - 77

Sequence


           ______________________________________________________________________________77________________________________________ 
 5sy1(C) : ****ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKL 
         :                                                                                                                          
 3wfn(D) : HHHMADQLTEEQIAEFKEAFSL------gTITT-eL--vM------------------------gTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKL 
           ______________________________________________________________________________77________________________________________ 

           _____________________________________________________                                                                    
 5sy1(C) : TDEEVDEMIREADIDGDGQVNYEEFVTMMTS**********************                                                                    
         :                                                                                                                          
 3wfn(D) : TDEEVDEMIREA-iDG-gQVNYEEFVQMMTgGEEVSAVVLQRAYRGHLARRGF                                                                    
           _____________________________________________________                                                                    

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
126.0
Translation
(A)
-5.9
Closure
(%)
92.6
Bending Residues
( green )
  77 - 78
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

Download and extract PyMOL PML script file Download