Calmodulin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calmodulin
  Conformer 1
(PDB)
5sy1 (C)
  Conformer 2
(PDB)
6cnm (H)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 39 2.74   102 - 131   137 - 145
2 23 1.44   84 - 101   132 - 136

Sequence


           _________________________________________________________________________________________________101____________________ 
 5sy1(C) : ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEE 
         :                                                                                                                          
 6cnm(H) : ********************************************************************************SEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEE 
           _________________________________________________________________________________________________100____________________ 

           _______131__136____________                                                                                              
 5sy1(C) : VDEMIREADIDGDGQVNYEEFVTMMTS                                                                                              
         :                                                                                                                          
 6cnm(H) : VDEMIREADIDGDGQVNYEEFVQMMT*                                                                                              
           _______130__135____________                                                                                              

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
36.1
Translation
(A)
1.9
Closure
(%)
99.1
Bending Residues
( green )
  101 - 102
  131 - 133
  136 - 138
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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