Calmodulin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calmodulin
  Conformer 1
(PDB)
3dvm (A)
  Conformer 2
(PDB)
3bya (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 65 0.8   6 - 70
2 61 1.38   71 - 138

Sequence


           ________________________________________________________________68______________________________________________________ 
 3dvm(A) : *LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKtDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMI 
         :                                                                                                                          
 3bya(A) : QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMA----sEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMI 
           ________________________________________________________________68______________________________________________________ 

           _____________________                                                                                                    
 3dvm(A) : READIDGDGQVNYEEFVQMMT                                                                                                    
         :                                                                                                                          
 3bya(A) : READIDGDGQVNYEEFVQMMT                                                                                                    
           _____________________                                                                                                    

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
10.3
Translation
(A)
0.0
Closure
(%)
98.3
Bending Residues
( green )
  68 - 86
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download