Calmodulin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calmodulin
  Conformer 1
(PDB)
1cll (A)
  Conformer 2
(PDB)
2vas (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 31 0.93   6 - 26   63 - 72
2 36 1.23   27 - 62
3 67 1.01   79 - 145

Sequence


           _____________________26__________________________________62________72___________________________________________________ 
 1cll(A) : LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDE 
         :                                                                                                                          
 2vas(B) : LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR---dTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDE 
           _____________________26__________________________________62________72___________________________________________________ 

           ________________________                                                                                                 
 1cll(A) : MIREADIDGDGQVNYEEFVQMMTA                                                                                                 
         :                                                                                                                          
 2vas(B) : MIREADIDGDGQVNYEEFVTMMTS                                                                                                 
           ________________________                                                                                                 

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
28.0
Translation
(A)
1.4
Closure
(%)
86.8
Bending Residues
( green )
  26 - 27
  62 - 63
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
177.1
Translation
(A)
1.4
Closure
(%)
74.2
Bending Residues
( green )
  72 - 80
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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