Calmodulin (Vertebrate)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calmodulin (Vertebrate)
  Conformer 1
(PDB)
1cdl (A)
  Conformer 2
(PDB)
1exr (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 69 1.31   76 - 144
2 69 0.92   7 - 75

Sequence


           ______________________________________________________________________73________________________________________________ 
 1cdl(A) : ***TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEV 
         :                                                                                                                          
 1exr(A) : EQLTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKEQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEV 
           ______________________________________________________________________73________________________________________________ 

           __________________________                                                                                               
 1cdl(A) : DEMIREADIDGDGQVNYEEFVQMMT*                                                                                               
         :                                                                                                                          
 1exr(A) : DEMIREADIDGDGHINYEEFVRMMVS                                                                                               
           __________________________                                                                                               

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
155.6
Translation
(A)
-2.7
Closure
(%)
55.3
Bending Residues
( green )
  73 - 78
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download