Coagulation Factor VIII Light Chain

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Coagulation Factor VIII Light Chain
  Conformer 1
(PDB)
3cdz (B)
  Conformer 2
(PDB)
3j2q (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 150 0.1   2022 - 2171
2 318 0.84   1693 - 2021
3 159 0.28   2172 - 2330

Sequence


           ________________________________________________________________________________________________________________________ 
 3cdz(B) : FQKKTRHYFIAAVERLWDYGMSSgSVPQFKKVVFQEFTDGSFTQPLYRGELNEHLGLLGPYIRAEVEDNIMVTFRNQASRPYSFYSSLISYEEDQRQGAEPRKNFVKPNETKTYFWKVQH 
         :                                                                                                                          
 3j2q(B) : FQKKTRHYFIAAVERLWDYGMSSgSVPQFKKVVFQEFTDGSFTQPLYRGELNEHLGLLGPYIRAEVEDNIMVTFRNQASRPYSFYSSLISYEEDQRQGAEPRKNFVKPNETKTYFWKVQH 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3cdz(B) : HMAPTKDEFDCKAWAYFSDVDLEKDVHSGLIGPLLVCHTNTLNPAHGRQVTVQEFALFLTIFDETKSWYFTENMERNCRAPCNIQMEDPTFKENYRFHAINGYIMDTLPGLVMAQDQRIR 
         :                                                                                                                          
 3j2q(B) : HMAPTKDEFDCKAWAYFSDVDLEKDVHSGLIGPLLVCHTNTLNPAHGRQVTVQEFALFLTIFDETKSWYFTENMERNCRAPCNIQMEDPTFKENYRFHAINGYIMDTLPGLVMAQDQRIR 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________2017____________________________________________ 
 3cdz(B) : WYLLSMGSNENIHSIHFSGHVFTVRKKEEYKMALYNLYPGVFETVEMLPSKAGIWRVECLIGEHLHAGMSTLFLVYSNKCQTPLGMASGHIRDFQITASGQYGQWAPKLARLHYSGSINA 
         :                                                                                                                          
 3j2q(B) : WYLLSMGSNENIHSIHFSGHVFTVRKKEEYKMALYNLYPGVFETVEMLPSKAGIWRVECLIGEHLHAGMSTLFLVYSNKCQTPLGMASGHIRDFQITASGQYGQWAPKLARLHYSGSINA 
           ________________________________________________________________________2017____________________________________________ 

           ________________________________________________________________________________________________________2169____________ 
 3cdz(B) : WSTKEPFSWIKVDLLAPMIIHGIKTQGARQKFSSLYISQFIIMYSLDGKKWQTYRGNSTGTLMVFFGNVDSSGIKHNIFNPPIIARYIRLHPTHYSIRSTLRMELMGCDLNSCSMPLGME 
         :                                                                                                                          
 3j2q(B) : WSTKEPFSWIKVDLLAPMIIHGIKTQGARQKFSSLYISQFIIMYSLDGKKWQTYRGNSTGTLMVFFGNVDSSGIKHNIFNPPIIARYIRLHPTHYSIRSTLRMELMGCDLNSCSMPLGME 
           ________________________________________________________________________________________________________2169____________ 

           ________________________________________________________________________________________________________________________ 
 3cdz(B) : SKAISDAQITASSYFTNMFATWSPSKARLHLQGRSNAWRPQVNNPKEWLQVDFQKTMKVTGVTTQGVKSLLTSMYVKEFLISSSQDGHQWTLFFQNGKVKVFQGNQDSFTPVVNSLDPPL 
         :                                                                                                                          
 3j2q(B) : SKAISDAQITASSYFTNMFATWSPSKARLHLQGRSNAWRPQVNNPKEWLQVDFQKTMKVTGVTTQGVKSLLTSMYVKEFLISSSQDGHQWTLFFQNGKVKVFQGNQDSFTPVVNSLDPPL 
           ________________________________________________________________________________________________________________________ 

           _______________________________                                                                                          
 3cdz(B) : LTRYLRIHPQSWVHQIALRMEVLGCEAQDLY                                                                                          
         :                                                                                                                          
 3j2q(B) : LTRYLRIHPQSWVHQIALRMEVLGCEAQDLY                                                                                          
           _______________________________                                                                                          

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
161.6
Translation
(A)
7.6
Closure
(%)
80.5
Bending Residues
( green )
  2017 - 2022
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
85.8
Translation
(A)
-1.1
Closure
(%)
94.8
Bending Residues
( green )
  2169 - 2175
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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