1-Deoxy-D-Xylulose-5-Phosphate Reductoisomerase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 1-Deoxy-D-Xylulose-5-Phosphate Reductoisomerase
  Conformer 1
(PDB)
1k5h (A)
  Conformer 2
(PDB)
1q0q (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 204 2.16   102 - 102   125 - 126   130 - 132   151 - 168   172 - 190   212 - 270   295 - 396
2 169 0.78   3 - 101   103 - 124   127 - 129   133 - 150   169 - 171   271 - 294

Sequence


           _________________________________________________________________________________________________100____________________ 
 1k5h(A) : MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEFSPRYAVMDDEASAKLLKTMLQQQGSRTEVLSGQQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRAGKTI 
         :                                                                                                                          
 1q0q(A) : MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEFSPRYAVMDDEASAKLLKTMLQQQGSRTEVLSGQQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRAGKTI 
           _________________________________________________________________________________________________100____________________ 

           123______132_______________150_______________168________________________________________________________________________ 
 1k5h(A) : LLANKESLVTCGRLFMDAVKQSKAQLLPVDSEHNAIFQSLPQPIQHNLGYADLEQNGVVSILLTGSGGPFRETPLRDLATMTPDQACRHPNWSMGRKISVDSATMMNKGLEYIEARWLFN 
         :                                                                                                                          
 1q0q(A) : LLANKESLVTCGRLFMDAVKQSKAQLLPVDSEHNAIFQSLPQPIQHNLGYADLEQNGVVSILLTGSGGPFRETPLRDLATMTPDQACRHPNWSMGRKISVDSATMMNKGLEYIEARWLFN 
           123______132_______________150_______________168________________________________________________________________________ 

           ___________________________270_____________________294__________________________________________________________________ 
 1k5h(A) : ASASQMEVLIHPQSVIHSMVRYQDGSVLAQLGEPDMRTPIAHTMAWPNRVNSGVKPLDFCKLSALTFAAPDYDRYPCLKLAMEAFEQGQAATTALNAANEITVAAFLAQQIRFTDIAALN 
         :                                                                                                                          
 1q0q(A) : ASASQMEVLIHPQSVIHSMVRYQDGSVLAQLGEPDMRTPIAHTMAWPNRVNSGVKPLDFCKLSALTFAAPDYDRYPCLKLAMEAFEQGQAATTALNAANEITVAAFLAQQIRFTDIAALN 
           ___________________________270_____________________294__________________________________________________________________ 

           ______________________________________                                                                                   
 1k5h(A) : LSVLEKMDMREPQCVDDVLSVDANAREVARKEVMRLAS                                                                                   
         :                                                                                                                          
 1q0q(A) : LSVLEKMDMREPQCVDDVLSVDANAREVARKEVMRLAS                                                                                   
           ______________________________________                                                                                   

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
17.4
Translation
(A)
-0.1
Closure
(%)
99.1
Bending Residues
( green )
  100 - 106
  123 - 130
  132 - 137
  150 - 151
  168 - 172
  270 - 271
  294 - 295
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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