D-Glyceraldehyde-3-Phosphate-Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name D-Glyceraldehyde-3-Phosphate-Dehydrogenase
  Conformer 1
(PDB)
1crw (G)
  Conformer 2
(PDB)
1dss (G)
  Window Length 13
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 189 0.41   41 - 56   147 - 320
2 130 0.29   7 - 40   57 - 146   321 - 327

Sequence


           _____________________________________40______________56_________________________________________________________________ 
 1crw(G) : SKIGINGFGRIGRLVLRAALEMGAQVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKAEDGALVVDGKKITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIISAP 
         :                                                                                                                          
 1dss(G) : SKIGINGFGRIGRLVLRAALEMGAQVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKAEDGALVVDGKKITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIISAP 
           _____________________________________40______________56_________________________________________________________________ 

           ______________________146_______________________________________________________________________________________________ 
 1crw(G) : SADAPMFVCGVNLEKYSKDMKVVSNASCTTNCLAPVAKVLHENFEIVEGLMTTVHAVTATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFRVPTPNVSVVD 
         :                                                                                                                          
 1dss(G) : SADAPMFVCGVNLEKYSKDMKVVSNAS-tTNCLAPVAKVLHENFEIVEGLMTTVHAVTATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFRVPTPNVSVVD 
           ______________________146_______________________________________________________________________________________________ 

           ____________________________________________________________________________320______________                            
 1crw(G) : LTVRLGKECSYDDIKAAMKAASEGPLQGVLGYTEDDVVSCDFTGDNRSSIFDAKAGIQLSKTFVKVVSWYDNEFGYSQRVIDLIKHMQKVDSA                            
         :                                                                                                                          
 1dss(G) : LTVRLGKECSYDDIKAAMKAASEGPLQGVLGYTEDDVVSCDFTGDNRSSIFDAKAGIQLSKTFVKVVSWYDNEFGYSQRVIDLIKHMQKVDSA                            
           ____________________________________________________________________________320______________                            

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
3.1
Translation
(A)
-0.1
Closure
(%)
20.9
Bending Residues
( green )
  40 - 41
  56 - 67
  146 - 147
  320 - 321
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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