Diaminopimelate Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Diaminopimelate Dehydrogenase
  Conformer 1
(PDB) 		3wb9 (A)
  Conformer 2
(PDB) 		3wbf (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 227 0.34   5 - 147   172 - 179   222 - 297
2 66 0.36   148 - 171   180 - 221

Sequence


           ________________________________________________________________________________________________________________________ 
 3wb9(A) : KLRVAVVGYGNVGRYALEAVQAAPDMELVGVVRRKVLAATPPELTGVRVVTDISQLEGVQGALLCVPTRSVPEYAEAMLRRGIHTVDSYDIHGDLADLRRRLDPVAREHGAAAVISAGWD 
         :                                                                                                                          
 3wbf(A) : KLRVAVVGYGNVGRYALEAVQAAPDMELVGVVRRKVLAATPPELTGVRVVTDISQLEGVQGALLCVPTRSVPEYAEAMLRRGIHTVDSYDIHGDLADLRRRLDPVAREHGAAAVISAGWD 
           ________________________________________________________________________________________________________________________ 

           ______________________147_____________________171_______________________________________________221_____________________ 
 3wb9(A) : PGTDSIIRALLEFMAPKGITYTNFGPGMSMGHSVAVKAIPGVRDALSMTIPAGMGVHKRAVYVELEPGADFAEVERAIKTDPYFVRDETRVTQVESVSALMDVGHGVVMERKGVSGATHN 
         :                                                                                                                          
 3wbf(A) : PGTDSIIRALLEFMAPKGITYTNFGPGMSMGHSVAVKAIPGVRDALSMTIPAGMGVHKRAVYVELEPGADFAEVERAIKTDPYFVRDETRVTQVESVSALMDVGHGVVMERKGVSGATHN 
           ______________________147_____________________171_______________________________________________221_____________________ 

           _________________________________________________________                                                                
 3wb9(A) : QLFRFEMRINNPALTAQVMVAALRAAARQKPGCYTMIEIPVIDYLPGDREAWIRKLV                                                                
         :                                                                                                                          
 3wbf(A) : QLFRFEMRINNPALTAQVMVAALRAAARQKPGCYTMIEIPVIDYLPGDREAWIRKLV                                                                
           _________________________________________________________                                                                

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		17.9
Translation
(A) 		-0.1
Closure
(%) 		96.1
Bending Residues
( green ) 		  147 - 148
  171 - 182
  221 - 222
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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